"#"

CHANGELOG.md

@@ -1,5 +1,21 @@
 # Changelog
 
+## 2.1.0
+
+### Breaking Changes
+
+_None._
+
+### Features
+
+- **`adopt` command for non-destructive existing subrepos**: `josh-sync adopt <target>` imports existing subrepo content into the monorepo, waits for the import PR to merge, then creates an adoption merge commit on the subrepo. The adoption merge uses the Josh-filtered monorepo commit as first parent and the existing subrepo commit as second parent, preserving old subrepo history while establishing Josh-compatible ancestry.
+- **Resumable adoption state**: adoption progress is stored on `josh-sync-state` at `<target>/adopt.json`, separate from sync and onboard state.
+
+### Safety
+
+- Adoption requires the subrepo tree to match the Josh-filtered monorepo tree before creating the merge commit.
+- Adoption pushes with a normal fast-forward push only. It never force-pushes.
+
 ## 2.0.0
 
 ### Breaking Changes

Makefile

@@ -23,7 +23,7 @@ dist/josh-sync: bin/josh-sync lib/*.sh VERSION
 	@echo '# Generated by: make build' >> dist/josh-sync
 	@echo '' >> dist/josh-sync
 	@# Inline all library modules (strip shebangs and source directives)
-	@for f in lib/core.sh lib/config.sh lib/auth.sh lib/state.sh lib/sync.sh lib/onboard.sh; do \
+	@for f in lib/core.sh lib/config.sh lib/auth.sh lib/state.sh lib/sync.sh lib/adopt.sh lib/onboard.sh; do \
 		echo "# --- $$f ---" >> dist/josh-sync; \
 		grep -v '^#!/' "$$f" | grep -v '^# shellcheck source=' >> dist/josh-sync; \
 		echo '' >> dist/josh-sync; \

README.md

@@ -85,6 +85,7 @@ CI workflows pin to a floating major tag (e.g. `@v1`). A breaking change bumps t
 josh-sync sync [--forward|--reverse] [--force] [--target NAME[,NAME]] [--branch BRANCH]
 josh-sync preflight
 josh-sync import <target>
+josh-sync adopt <target> [--restart]
 josh-sync reset <target>
 josh-sync onboard <target> [--restart]
 josh-sync migrate-pr <target> [PR#...] [--all]
@@ -97,6 +98,7 @@ josh-sync state reset <target> [branch]
 
 - **Forward sync** (mono → subrepo): pushes directly if clean, creates conflict PR if not. Uses `--force-with-lease` for safety.
 - **Reverse sync** (subrepo → mono): creates a PR by default. Add `--force` to bypass the PR and push directly to the mono branch (destructive).
+- **Adoption**: existing active subrepos can be connected to josh-sync with a normal fast-forward merge commit, preserving old subrepo history and avoiding force-push.
 - **File exclusion**: `exclude` patterns are embedded inline in the josh-proxy URL. Excluded files exist only in the monorepo.
 - **Filter reconciliation**: Changing the exclude list auto-creates a merge commit that connects old and new histories — no force-push needed.
 - **Loop prevention**: `Josh-Sync-Origin:` git trailer filters out bot commits.

VERSION

@@ -1 +1 @@
-2.0.0
+2.1.0

bin/josh-sync

@@ -8,6 +8,7 @@
 #   sync              Run forward and/or reverse sync
 #   preflight         Validate config, connectivity, auth
 #   import <target>   Initial import: pull subrepo into monorepo
+#   adopt <target>    Adopt existing subrepo history without rewriting it
 #   reset <target>    Reset subrepo to josh-filtered view
 #   onboard <target>  Import existing subrepo into monorepo (interactive)
 #   migrate-pr <target> [PR#...] [--all]   Move PRs from archived to new subrepo
@@ -41,6 +42,8 @@ source "${JOSH_LIB_DIR}/auth.sh"
 source "${JOSH_LIB_DIR}/state.sh"
 # shellcheck source=../lib/sync.sh
 source "${JOSH_LIB_DIR}/sync.sh"
+# shellcheck source=../lib/adopt.sh
+source "${JOSH_LIB_DIR}/adopt.sh"
 # shellcheck source=../lib/onboard.sh
 source "${JOSH_LIB_DIR}/onboard.sh"
 
@@ -72,6 +75,7 @@ Commands:
   sync              Run forward and/or reverse sync
   preflight         Validate config, connectivity, auth, workflow coverage
   import <target>   Initial import: pull existing subrepo into monorepo (creates PR)
+  adopt <target>    Adopt existing subrepo history without rewriting it
   reset <target>    Reset subrepo to josh-filtered view (after merging import PR)
   onboard <target>  Import existing subrepo into monorepo (interactive, resumable)
   migrate-pr <target> [PR#...] [--all]  Move PRs from archived to new subrepo
@@ -530,6 +534,42 @@ cmd_import() {
   done
 }
 
+# ─── Adopt Command ─────────────────────────────────────────────────
+
+cmd_adopt() {
+  local config_file=".josh-sync.yml"
+  local target_name=""
+  local restart=false
+
+  while [ $# -gt 0 ]; do
+    case "$1" in
+      --config)   config_file="$2"; shift 2 ;;
+      --debug)    export JOSH_SYNC_DEBUG=1; shift ;;
+      --restart)  restart=true; shift ;;
+      -*) die "Unknown flag: $1" ;;
+      *)  target_name="$1"; shift ;;
+    esac
+  done
+
+  if [ -z "$target_name" ]; then
+    echo "Usage: josh-sync adopt <target> [--restart]" >&2
+    parse_config "$config_file"
+    echo "Available targets:" >&2
+    echo "$JOSH_SYNC_TARGETS" | jq -r '.[].name' | sed 's/^/  /' >&2
+    exit 1
+  fi
+
+  parse_config "$config_file"
+
+  local target_json
+  target_json=$(echo "$JOSH_SYNC_TARGETS" | jq -c --arg n "$target_name" '.[] | select(.name == $n)')
+  [ -n "$target_json" ] || die "Target '${target_name}' not found in config"
+
+  log "INFO" "══════ Adopt target: ${target_name} ══════"
+  load_target "$target_json"
+  adopt_flow "$target_json" "$restart"
+}
+
 # ─── Reset Command ─────────────────────────────────────────────────
 
 cmd_reset() {
@@ -886,6 +926,7 @@ main() {
     sync)       cmd_sync "$@" ;;
     preflight)  cmd_preflight "$@" ;;
     import)     cmd_import "$@" ;;
+    adopt)      cmd_adopt "$@" ;;
     reset)      cmd_reset "$@" ;;
     onboard)    cmd_onboard "$@" ;;
     migrate-pr) cmd_migrate_pr "$@" ;;

docs/adr/013-non-destructive-adoption.md

@@ -0,0 +1,55 @@
+# ADR-013: Non-destructive adoption merge for existing subrepos
+
+**Status:** Accepted
+**Date:** 2026-04
+
+## Context
+
+Existing subrepos often already have real history, open PRs, and developer clones.
+The original `import` then `reset` onboarding path establishes Josh-compatible
+history by force-pushing the Josh-filtered monorepo history onto the subrepo.
+That is correct for empty replacement repos, but it rewrites the active subrepo
+branch and invalidates local clones.
+
+We need a path for active subrepos where history must remain available on the
+same branch and where open PR branches should stay based on the existing history.
+
+## Decision
+
+Add `josh-sync adopt <target>` as a separate workflow from `onboard` and `reset`.
+Adoption imports the subrepo content into the monorepo, waits for the import PR
+to merge, then creates one merge commit on each configured subrepo branch:
+
+1. First parent: Josh-filtered monorepo HEAD
+2. Second parent: existing subrepo HEAD
+3. Tree: Josh-filtered monorepo tree
+
+Josh follows first-parent history back to the monorepo, while Git still keeps
+the old subrepo history reachable through parent 2. The push is a normal
+fast-forward push from the existing subrepo HEAD to the adoption merge commit.
+No force-push is used.
+
+Before creating the adoption merge, josh-sync requires the existing subrepo tree
+to match the Josh-filtered monorepo tree. If the trees differ, adoption aborts
+and the user must merge the import PR or reconcile the branch contents first.
+
+Adoption state is stored separately at `<target>/adopt.json` on the
+`josh-sync-state` branch.
+
+## Consequences
+
+**Positive:**
+
+- Existing subrepo history remains on the active branch.
+- Existing clones can fast-forward instead of hard-resetting or re-cloning.
+- Open PR branches remain based on reachable history.
+- Josh-compatible ancestry is established without a destructive rewrite.
+
+**Negative:**
+
+- Adoption adds one synthetic merge commit to each adopted subrepo branch.
+- Strict "no subrepo commit at all" adoption is impossible if the existing
+  subrepo branch must become connected to the Josh-filtered history without a
+  rewrite. A commit is needed to join the two histories.
+- Tree equality is strict. If the monorepo import differs from the subrepo
+  content, adoption stops until the user resolves the mismatch.

docs/adr/README.md

@@ -18,3 +18,4 @@ This directory contains Architecture Decision Records (ADRs) for josh-sync. Each
 | [010](010-onboard-checkpoint-resume.md) | Onboard workflow with checkpoint/resume | Accepted |
 | [011](011-linearize-fallback-reverse.md) | Linearize fallback for reverse sync | Accepted |
 | [012](012-explicit-monorepo-url.md) | Explicit `monorepo_url` (drop first-target-host inference) | Accepted |
+| [013](013-non-destructive-adoption.md) | Non-destructive adoption merge for existing subrepos | Accepted |

docs/guide.md

@@ -224,14 +224,40 @@ For a new monorepo before import, preflight may warn that subfolders don't exist
 
 ## Step 5: Import Existing Subrepos
 
-This is the critical onboarding step. There are two approaches:
+This is the critical onboarding step. There are three approaches:
 
-- **`josh-sync onboard`** (recommended) — interactive, resumable, preserves open PRs
+- **`josh-sync adopt`** (recommended for active existing subrepos) — non-destructive, resumable, preserves existing subrepo history
-- **Manual `import` → merge → `reset`** — lower-level, for automation or when there are no open PRs to preserve
+- **`josh-sync onboard`** — destructive replacement-repo workflow for teams that intentionally archive the old repo
+- **Manual `import` → merge → `reset`** — lower-level destructive path for automation or empty replacement repos
 
-### Option A: Onboard (recommended)
+### Option A: Adopt (recommended for active subrepos)
 
-The `onboard` command walks you through the entire process interactively, with checkpoint/resume at every step.
+Use `adopt` when the subrepo already exists, developers already clone it, or open PR branches should remain based on existing history.
+
+```bash
+josh-sync adopt billing
+```
+
+The command will:
+1. **Import** — copies current subrepo content into the monorepo and creates import PRs (one per branch)
+2. **Wait for merge** — shows PR numbers and waits for you to merge them
+3. **Verify trees** — requires the existing subrepo tree to match the Josh-filtered monorepo tree
+4. **Adopt** — creates a merge commit on the subrepo with Josh-filtered HEAD as parent 1 and existing subrepo HEAD as parent 2
+5. **Push** — pushes the adoption merge with a normal fast-forward push, never force-push
+
+The adoption merge preserves the old subrepo history while giving Josh a first-parent path back to the monorepo. If interrupted, re-run `josh-sync adopt billing` to resume. Use `--restart` to start over.
+
+After adoption, developers can update existing clones with a normal fast-forward:
+
+```bash
+git fetch origin
+git checkout main
+git merge --ff-only origin/main
+```
+
+### Option B: Onboard with replacement repo
+
+The `onboard` command walks through the destructive replacement-repo process interactively, with checkpoint/resume at every step.
 
 **Before you start:**
 
@@ -272,13 +298,13 @@ josh-sync migrate-pr billing 5 8 12
 
 PR migration works by fetching the diff from the archived repo's PR, applying it to the new repo, and creating a new PR. File content is identical after reset, so patches apply cleanly.
 
-### Option B: Manual import → merge → reset
+### Option C: Manual import → merge → reset
 
-Use this when the subrepo has no open PRs to preserve, or for scripted automation.
+Use this for scripted automation or when you intentionally want to replace subrepo history.
 
 > Do this **one target at a time** to keep PRs reviewable.
 
-#### 5b-1. Import
+#### 5c-1. Import
 
 ```bash
 josh-sync import billing
@@ -293,13 +319,13 @@ This:
 
 Review the import PR — check for leaked credentials, environment-specific config, or files that shouldn't be in the monorepo.
 
-#### 5b-2. Merge the import PR
+#### 5c-2. Merge the import PR
 
 Merge the PR using your Git platform's UI. This lands the subrepo content into the monorepo's main branch.
 
 > At this point, the monorepo has the content but the histories are disconnected. Sync will **not** work until you complete the reset step.
 
-#### 5b-3. Reset
+#### 5c-3. Reset
 
 ```bash
 josh-sync reset billing
@@ -326,7 +352,7 @@ git checkout stage && git reset --hard origin/stage   # repeat for each branch
 
 Or simply delete and re-clone the subrepo. Local-only branches (not pushed to the remote) will be lost either way.
 
-#### 5b-4. Repeat for each target
+#### 5c-4. Repeat for each target
 
 ```
 For each target:
@@ -337,13 +363,13 @@ For each target:
 
 ### Verify
 
-After all targets are imported and reset (whichever option you used):
+After all targets are adopted or reset:
 
 ```bash
 # Check all targets show state
 josh-sync status
 
-# Test forward sync — should return "skip" (trees are identical after reset)
+# Test forward sync — should return "skip" (trees are identical after adoption/reset)
 josh-sync sync --forward --target billing
 
 # Test reverse sync — should return "skip" (no new human commits)
@@ -620,9 +646,12 @@ To add a new subrepo after initial setup:
 1. Add the target to `.josh-sync.yml`
 2. Update the forward workflow's `paths:` list to include the new subfolder
 3. Commit and push
-4. Import the target:
+4. Import or adopt the target:
    ```bash
-   # Recommended: interactive onboard (preserves open PRs)
+   # Recommended for an existing active subrepo
+   josh-sync adopt new-target
+
+   # Replacement-repo workflow
    josh-sync onboard new-target
 
    # Or manual: import → merge PR → reset

lib/adopt.sh

@@ -0,0 +1,335 @@
+#!/usr/bin/env bash
+# lib/adopt.sh — Non-destructive adoption of existing subrepo history
+#
+# Provides:
+#   adopt_flow()   — Import → wait for merge → adoption merge per branch
+#   adopt_branch() — Create the adoption merge and push it fast-forward only
+#
+# Adopt state is stored on the josh-sync-state branch at <target>/adopt.json.
+# Steps: start → importing → waiting-for-merge → adopting → complete
+#
+# Requires: lib/core.sh, lib/config.sh, lib/auth.sh, lib/state.sh, lib/sync.sh sourced
+
+# ─── Adopt State Helpers ─────────────────────────────────────────
+
+read_adopt_state() {
+  local target_name="${1:-$JOSH_SYNC_TARGET_NAME}"
+  git fetch origin "$STATE_BRANCH" 2>/dev/null || true
+  git show "origin/${STATE_BRANCH}:${target_name}/adopt.json" 2>/dev/null || echo '{}'
+}
+
+write_adopt_state() {
+  local target_name="${1:-$JOSH_SYNC_TARGET_NAME}"
+  local state_json="$2"
+  local key="${target_name}/adopt"
+  local tmp_dir
+  tmp_dir=$(mktemp -d)
+
+  if git rev-parse "origin/${STATE_BRANCH}" >/dev/null 2>&1; then
+    git worktree add "$tmp_dir" "origin/${STATE_BRANCH}" 2>/dev/null
+  else
+    git worktree add --detach "$tmp_dir" 2>/dev/null
+    (cd "$tmp_dir" && git checkout --orphan "$STATE_BRANCH" && git rm -rf . 2>/dev/null || true)
+  fi
+
+  mkdir -p "$(dirname "${tmp_dir}/${key}.json")"
+  echo "$state_json" | jq '.' > "${tmp_dir}/${key}.json"
+
+  (
+    cd "$tmp_dir" || exit
+    git add -A
+    if ! git diff --cached --quiet 2>/dev/null; then
+      git -c user.name="$BOT_NAME" -c user.email="$BOT_EMAIL" \
+        commit -m "adopt: update ${target_name}"
+      git push origin "HEAD:${STATE_BRANCH}" || log "WARN" "Failed to push adopt state"
+    fi
+  )
+
+  git worktree remove "$tmp_dir" 2>/dev/null || rm -rf "$tmp_dir"
+}
+
+# ─── Adopt Branch ────────────────────────────────────────────────
+# Establishes shared ancestry without rewriting the existing subrepo branch.
+#
+# Preconditions:
+# - The subrepo branch and josh-filtered monorepo branch must have identical trees.
+#
+# Resulting commit:
+# - parent 1: josh-filtered HEAD, so josh can follow first-parent history
+# - parent 2: existing subrepo HEAD, so old subrepo history stays reachable
+# - tree:     josh-filtered tree
+#
+# Returns: adopted | already-adopted | tree-mismatch | push-rejected | missing-branch
+
+adopt_branch() {
+  local mono_branch="$SYNC_BRANCH_MONO"
+  local subrepo_branch="$SYNC_BRANCH_SUBREPO"
+  local work_dir
+  work_dir=$(mktemp -d)
+  # shellcheck disable=SC2064  # Intentional early expansion — work_dir is local
+  trap "rm -rf '$work_dir'" EXIT
+
+  log "INFO" "=== Adopt: subrepo/${subrepo_branch} ↔ mono/${mono_branch} ==="
+
+  local remote_subrepo_sha
+  remote_subrepo_sha=$(git ls-remote "$(subrepo_auth_url)" "refs/heads/${subrepo_branch}" | awk '{print $1}') \
+    || die "Failed to reach subrepo (check SSH key / auth)"
+  if [ -z "$remote_subrepo_sha" ]; then
+    log "ERROR" "Subrepo branch ${subrepo_branch} does not exist"
+    echo "missing-branch"
+    return
+  fi
+
+  git clone "$(subrepo_auth_url)" \
+    --branch "$subrepo_branch" --single-branch \
+    "${work_dir}/subrepo" || die "Failed to clone subrepo"
+
+  cd "${work_dir}/subrepo" || exit
+  git config user.name "$BOT_NAME"
+  git config user.email "$BOT_EMAIL"
+
+  local subrepo_head subrepo_tree
+  subrepo_head=$(git rev-parse HEAD)
+  # shellcheck disable=SC1083  # {tree} is git syntax, not shell brace expansion
+  subrepo_tree=$(git rev-parse "HEAD^{tree}")
+  log "INFO" "Subrepo HEAD: ${subrepo_head:0:12}"
+
+  git remote add josh-filtered "$(josh_auth_url)"
+  git fetch josh-filtered "$mono_branch" || die "Failed to fetch from josh-proxy"
+
+  local josh_head josh_tree
+  josh_head=$(git rev-parse "josh-filtered/${mono_branch}")
+  # shellcheck disable=SC1083
+  josh_tree=$(git rev-parse "josh-filtered/${mono_branch}^{tree}")
+  log "INFO" "Josh-filtered HEAD: ${josh_head:0:12}"
+
+  if [ "$subrepo_tree" != "$josh_tree" ]; then
+    log "ERROR" "Tree mismatch: merge the import PR and ensure subrepo/${subrepo_branch} matches mono/${mono_branch} before adopting"
+    echo "tree-mismatch"
+    return
+  fi
+
+  if git merge-base --is-ancestor "$josh_head" "$subrepo_head" \
+    && git merge-base --is-ancestor "$subrepo_head" "$josh_head"; then
+    log "INFO" "Subrepo and josh-filtered histories already point to the same commit"
+    echo "already-adopted"
+    return
+  fi
+
+  if git merge-base --is-ancestor "$josh_head" "$subrepo_head"; then
+    log "INFO" "Josh-filtered HEAD is already an ancestor of subrepo HEAD"
+    echo "already-adopted"
+    return
+  fi
+
+  local merge_commit
+  merge_commit=$(git commit-tree "$josh_tree" \
+    -p "$josh_head" \
+    -p "$subrepo_head" \
+    -m "Adopt ${JOSH_SYNC_TARGET_NAME} for josh-sync
+
+${BOT_TRAILER}: adopt/${mono_branch}/$(date -u +%Y-%m-%dT%H:%M:%SZ)")
+
+  git reset --hard "$merge_commit" >&2
+  log "INFO" "Created adoption merge: ${merge_commit:0:12}"
+
+  if git push "$(subrepo_auth_url)" "HEAD:refs/heads/${subrepo_branch}"; then
+    log "INFO" "Adoption complete: pushed fast-forward merge to subrepo/${subrepo_branch}"
+    echo "adopted"
+  else
+    log "WARN" "Fast-forward push rejected — subrepo changed during adoption"
+    echo "push-rejected"
+  fi
+}
+
+# ─── Adopt Flow ──────────────────────────────────────────────────
+# Interactive orchestrator with checkpoint/resume.
+# Usage: adopt_flow <target_json> <restart>
+
+adopt_flow() {
+  local target_json="$1"
+  local restart="${2:-false}"
+  local target_name="$JOSH_SYNC_TARGET_NAME"
+
+  local adopt_state current_step
+  adopt_state=$(read_adopt_state "$target_name")
+  current_step=$(echo "$adopt_state" | jq -r '.step // "start"')
+
+  if [ "$restart" = true ]; then
+    log "INFO" "Restarting adopt from scratch"
+    current_step="start"
+    adopt_state='{}'
+  fi
+
+  log "INFO" "Adopt step: ${current_step}"
+
+  if [ "$current_step" = "start" ]; then
+    echo "" >&2
+    echo "=== Adopting ${target_name} ===" >&2
+    echo "" >&2
+    echo "This keeps the existing subrepo history and adds one adoption merge commit per branch." >&2
+    echo "No force-push is used. Existing open PR branches remain based on the old history." >&2
+    echo "" >&2
+
+    adopt_state=$(jq -n \
+      --arg step "importing" \
+      --arg mode "adopt" \
+      --arg ts "$(date -u +%Y-%m-%dT%H:%M:%SZ)" \
+      '{step:$step, mode:$mode, import_prs:{}, adopted_branches:[], timestamp:$ts}')
+    write_adopt_state "$target_name" "$adopt_state"
+    current_step="importing"
+  fi
+
+  if [ "$current_step" = "importing" ]; then
+    echo "" >&2
+    log "INFO" "Step 1: Importing current subrepo content into monorepo..."
+
+    local branches import_prs
+    branches=$(echo "$target_json" | jq -r '.branches | keys[]')
+    import_prs=$(echo "$adopt_state" | jq -r '.import_prs // {}')
+
+    for branch in $branches; do
+      local mapped
+      mapped=$(echo "$target_json" | jq -r --arg b "$branch" '.branches[$b] // empty')
+      [ -z "$mapped" ] && continue
+
+      if echo "$import_prs" | jq -e --arg b "$branch" 'has($b)' >/dev/null 2>&1; then
+        log "INFO" "Import PR already recorded for ${branch} — skipping"
+        continue
+      fi
+
+      export SYNC_BRANCH_MONO="$branch"
+      export SYNC_BRANCH_SUBREPO="$mapped"
+
+      local result
+      result=$(initial_import)
+      log "INFO" "Import result for ${branch}: ${result}"
+
+      if [ "$result" = "pr-created" ]; then
+        local prs pr_number
+        prs=$(list_open_prs "$MONOREPO_API" "$GITEA_TOKEN")
+        pr_number=$(echo "$prs" | jq -r --arg t "$target_name" --arg b "$branch" \
+          '[.[] | select(.title | test("\\[Import\\] " + $t + ":")) | select(.base.ref == $b)] | .[0].number // empty')
+
+        [ -n "$pr_number" ] || die "Could not find import PR number for ${branch}; cannot safely continue adoption"
+        import_prs=$(echo "$import_prs" | jq --arg b "$branch" --arg n "$pr_number" '. + {($b): ($n | tonumber)}')
+        log "INFO" "Import PR for ${branch}: #${pr_number}"
+      fi
+
+      adopt_state=$(echo "$adopt_state" | jq --argjson prs "$import_prs" '.import_prs = $prs')
+      write_adopt_state "$target_name" "$adopt_state"
+    done
+
+    adopt_state=$(echo "$adopt_state" | jq \
+      --arg step "waiting-for-merge" \
+      --argjson prs "$import_prs" \
+      '.step = $step | .import_prs = $prs')
+    write_adopt_state "$target_name" "$adopt_state"
+    current_step="waiting-for-merge"
+  fi
+
+  if [ "$current_step" = "waiting-for-merge" ]; then
+    echo "" >&2
+    log "INFO" "Step 2: Waiting for import PR(s) to be merged..."
+
+    local import_prs pr_count
+    import_prs=$(echo "$adopt_state" | jq -r '.import_prs')
+    pr_count=$(echo "$import_prs" | jq 'length')
+
+    if [ "$pr_count" -gt 0 ]; then
+      echo "" >&2
+      echo "Import PRs to merge:" >&2
+      echo "$import_prs" | jq -r 'to_entries[] | "  \(.key): PR #\(.value)"' >&2
+      echo "" >&2
+      echo "Merge the import PR(s) on the monorepo, then press Enter..." >&2
+      read -r
+
+      local all_merged=true
+      for branch in $(echo "$import_prs" | jq -r 'keys[]'); do
+        local pr_number pr_json merged
+        pr_number=$(echo "$import_prs" | jq -r --arg b "$branch" '.[$b]')
+        pr_json=$(get_pr "$MONOREPO_API" "$GITEA_TOKEN" "$pr_number")
+        merged=$(echo "$pr_json" | jq -r '.merged // false')
+
+        if [ "$merged" = "true" ]; then
+          log "INFO" "PR #${pr_number} (${branch}): merged"
+        else
+          log "ERROR" "PR #${pr_number} (${branch}): NOT merged — merge it first"
+          all_merged=false
+        fi
+      done
+
+      if [ "$all_merged" = false ]; then
+        die "Not all import PRs are merged. Re-run 'josh-sync adopt ${target_name}' after merging."
+      fi
+    else
+      log "INFO" "No import PRs recorded — subfolder already matched subrepo"
+    fi
+
+    adopt_state=$(echo "$adopt_state" | jq '.step = "adopting"')
+    write_adopt_state "$target_name" "$adopt_state"
+    current_step="adopting"
+  fi
+
+  if [ "$current_step" = "adopting" ]; then
+    echo "" >&2
+    log "INFO" "Step 3: Creating adoption merge commit(s)..."
+
+    local branches already_adopted
+    branches=$(echo "$target_json" | jq -r '.branches | keys[]')
+    already_adopted=$(echo "$adopt_state" | jq -r '.adopted_branches // []')
+
+    for branch in $branches; do
+      if echo "$already_adopted" | jq -e --arg b "$branch" 'index($b) != null' >/dev/null 2>&1; then
+        log "INFO" "Branch ${branch} already adopted — skipping"
+        continue
+      fi
+
+      local mapped
+      mapped=$(echo "$target_json" | jq -r --arg b "$branch" '.branches[$b] // empty')
+      [ -z "$mapped" ] && continue
+
+      export SYNC_BRANCH_MONO="$branch"
+      export SYNC_BRANCH_SUBREPO="$mapped"
+
+      local result
+      result=$(adopt_branch)
+      log "INFO" "Adopt result for ${branch}: ${result}"
+
+      case "$result" in
+        adopted|already-adopted)
+          adopt_state=$(echo "$adopt_state" | jq --arg b "$branch" '.adopted_branches += [$b]')
+          write_adopt_state "$target_name" "$adopt_state"
+          ;;
+        tree-mismatch)
+          die "Tree mismatch for ${branch}. Merge the import PR and make sure subrepo/${mapped} matches the Josh-filtered monorepo tree."
+          ;;
+        push-rejected)
+          die "Subrepo branch ${mapped} changed during adoption. Re-run 'josh-sync adopt ${target_name}' to retry."
+          ;;
+        missing-branch)
+          die "Subrepo branch ${mapped} does not exist."
+          ;;
+        *)
+          die "Unexpected adopt result: ${result}"
+          ;;
+      esac
+    done
+
+    adopt_state=$(echo "$adopt_state" | jq \
+      --arg step "complete" \
+      --arg ts "$(date -u +%Y-%m-%dT%H:%M:%SZ)" \
+      '.step = $step | .timestamp = $ts')
+    write_adopt_state "$target_name" "$adopt_state"
+    current_step="complete"
+  fi
+
+  if [ "$current_step" = "complete" ]; then
+    echo "" >&2
+    echo "=== Adoption complete! ===" >&2
+    echo "" >&2
+    echo "The subrepo keeps its existing history and now has a josh-sync adoption merge." >&2
+    echo "Developers can keep their clones; they only need to fast-forward active branches:" >&2
+    echo "  git fetch origin && git checkout main && git merge --ff-only origin/main" >&2
+  fi
+}

tests/unit/adopt.bats

@@ -0,0 +1,92 @@
+#!/usr/bin/env bats
+# tests/unit/adopt.bats — Non-destructive adoption merge tests
+
+setup() {
+  export JOSH_SYNC_ROOT="$(cd "$BATS_TEST_DIRNAME/../.." && pwd)"
+  source "$JOSH_SYNC_ROOT/lib/core.sh"
+  source "$JOSH_SYNC_ROOT/lib/adopt.sh"
+
+  TEST_ROOT="$(mktemp -d)"
+  export BOT_NAME="test-bot"
+  export BOT_EMAIL="test-bot@test.local"
+  export BOT_TRAILER="Josh-Sync-Origin"
+  export JOSH_SYNC_TARGET_NAME="example"
+  export SYNC_BRANCH_MONO="main"
+  export SYNC_BRANCH_SUBREPO="main"
+}
+
+teardown() {
+  rm -rf "$TEST_ROOT"
+}
+
+make_bare_repo() {
+  local name="$1"
+  local content="$2"
+  local message="$3"
+  local work="${TEST_ROOT}/${name}-work"
+  local bare="${TEST_ROOT}/${name}.git"
+
+  git init "$work" >/dev/null
+  git -C "$work" checkout -b main >/dev/null
+  git -C "$work" config user.name "Test User"
+  git -C "$work" config user.email "test@test.local"
+  printf '%s\n' "$content" > "${work}/README.md"
+  git -C "$work" add README.md
+  git -C "$work" commit -m "$message" >/dev/null
+
+  git init --bare "$bare" >/dev/null
+  git -C "$work" remote add origin "$bare"
+  git -C "$work" push origin main >/dev/null
+  printf '%s\n' "$bare"
+}
+
+subrepo_auth_url() {
+  printf '%s\n' "$SUBREPO_BARE"
+}
+
+josh_auth_url() {
+  printf '%s\n' "$JOSH_BARE"
+}
+
+@test "adopt_branch creates merge with josh head first parent and subrepo head second parent" {
+  SUBREPO_BARE="$(make_bare_repo subrepo "same tree" "subrepo history")"
+  JOSH_BARE="$(make_bare_repo josh "same tree" "josh filtered history")"
+
+  local old_subrepo_head josh_head josh_tree result adopt_head
+  old_subrepo_head=$(git --git-dir="$SUBREPO_BARE" rev-parse main)
+  josh_head=$(git --git-dir="$JOSH_BARE" rev-parse main)
+  josh_tree=$(git --git-dir="$JOSH_BARE" rev-parse 'main^{tree}')
+
+  result=$(adopt_branch)
+
+  [ "$result" = "adopted" ]
+  adopt_head=$(git --git-dir="$SUBREPO_BARE" rev-parse main)
+  [ "$adopt_head" != "$old_subrepo_head" ]
+  [ "$(git --git-dir="$SUBREPO_BARE" rev-parse 'main^1')" = "$josh_head" ]
+  [ "$(git --git-dir="$SUBREPO_BARE" rev-parse 'main^2')" = "$old_subrepo_head" ]
+  [ "$(git --git-dir="$SUBREPO_BARE" rev-parse 'main^{tree}')" = "$josh_tree" ]
+}
+
+@test "adopt_branch aborts when trees differ and leaves subrepo head unchanged" {
+  SUBREPO_BARE="$(make_bare_repo subrepo "subrepo tree" "subrepo history")"
+  JOSH_BARE="$(make_bare_repo josh "josh tree" "josh filtered history")"
+
+  local old_subrepo_head result
+  old_subrepo_head=$(git --git-dir="$SUBREPO_BARE" rev-parse main)
+
+  result=$(adopt_branch)
+
+  [ "$result" = "tree-mismatch" ]
+  [ "$(git --git-dir="$SUBREPO_BARE" rev-parse main)" = "$old_subrepo_head" ]
+}
+
+@test "adopt_branch reports missing subrepo branch before cloning" {
+  SUBREPO_BARE="$(make_bare_repo subrepo "same tree" "subrepo history")"
+  JOSH_BARE="$(make_bare_repo josh "same tree" "josh filtered history")"
+  export SYNC_BRANCH_SUBREPO="missing"
+
+  local result
+  result=$(adopt_branch)
+
+  [ "$result" = "missing-branch" ]
+}